ms-proteomics

v1.1.0 technology usable alone

Base SDRF template for mass spectrometry-based proteomics. This is the minimum valid template for any MS experiment.

Key Guidance

The ms-proteomics template is one of three usable-alone technology templates (the others

are affinity-proteomics and ms-metabolomics). It provides all columns needed for a basic

MS proteomics experiment and serves as the parent for specialized experiment templates

(DIA, XL-MS, immunopeptidomics, single-cell, metaproteomics).

Combine with an organism template (human, vertebrates, invertebrates, plants) to add

species-specific columns. Add clinical-metadata or oncology-metadata for clinical studies.

Key annotation guidance:

comment[label]: Always required. Use label free sample for LFQ, specific channel

names for multiplexed (TMT126, iTRAQ114, SILAC light/heavy).

comment[fraction identifier]: Always required. Use 1 for non-fractionated samples.

For fractionated experiments, each fraction gets its own row with the same source name.

comment[cleavage agent details]: Use CV term format NT=Trypsin;AC=MS:1001251.
comment[modification parameters]: Multiple cardinality. Each PTM gets its own column.

Format: NT=Oxidation;MT=Variable;TA=M;AC=Unimod:35.

comment[collision energy]: Format {value} {unit} (e.g., 30 NCE). For stepped

energies: 25 NCE;27 NCE;30 NCE or stepped 27+-6%.

comment[precursor mass tolerance] / comment[fragment mass tolerance]: Use ppm or Da

(e.g., 10 ppm, 0.02 Da).

MS range columns (comment[ms min/max mz/charge/rt/im]): Optional method parameters

for documenting acquisition settings.

Mutually exclusive with affinity-proteomics and ms-metabolomics.

Inheritance

base → sample-metadata → ms-proteomics

Combination Rules

Mutually exclusive with: affinity-proteomics

Columns

34 own + 25 inherited = 59 total · click a row for details

	Column	Requirement	Source	Description
▶	source name	required	base	Unique identifier for the biological sample
Description Unique identifier for the biological sample Ontology PRIDE:0000623 Properties
▶	assay name	required	base	Unique identifier for the data acquisition run
Description Unique identifier for the data acquisition run Ontology NCIT:C178857 Properties
▶	technology type	required	base	Type of technology used
Description Type of technology used Ontology PRIDE:0000663 Properties Validators single_cardinality_validator values — values: `proteomic profiling by mass spectrometry`, `protein expression profiling by antibody array`, `protein expression profiling by aptamer array`
▶	comment[technical replicate]	required	base	Identifier for the technical replicate (integer starting from 1)
Description Identifier for the technical replicate (integer starting from 1) Ontology MS:1001808 Properties type: integer
▶	comment[data file]	required	base	Name of the raw data file
Description Name of the raw data file Ontology MS:1003083 Properties
▶	characteristics[organism]	required	sample-metadata	Species of the sample using NCBI Taxonomy
Description Species of the sample using NCBI Taxonomy Ontology COB:0000022 Properties allows N/A Validators ontology — ontologies: ncbitaxon The organism should be a valid NCBI Taxonomy term Examples `homo sapiens`, `mus musculus`, `rattus norvegicus`, `saccharomyces cerevisiae`
▶	characteristics[organism part]	required	sample-metadata	Main normalized anatomical term for the sample
Description Main normalized anatomical term for the sample Ontology EFO:0000635 Properties allows N/A allows not available multiple cardinality Validators ontology — ontologies: uberon, bto The organism part should be a valid UBERON or BTO term Examples `liver`, `brain`, `heart`, `blood`
▶	characteristics[biological replicate]	required	sample-metadata	Identifier for the biological replicate (integer starting from 1, or 'pooled' for pooled samples)
Description Identifier for the biological replicate (integer starting from 1, or 'pooled' for pooled samples) Ontology MS:1001809 Properties Validators pattern — pattern: `^\d+$\|^pooled$` Biological replicate should be an integer or 'pooled' for pooled reference samples Examples `1`, `2`, `pooled`
▶	comment[proteomics data acquisition method]	required	ms-proteomics	Mass spectrometry acquisition method
Description Mass spectrometry acquisition method Ontology PRIDE:0000659 Properties Validators ontology — ontologies: pride The proteomics data acquisition method should be a valid PRIDE ontology term Examples `data-dependent acquisition`, `data-independent acquisition`, `parallel reaction monitoring`, `selected reaction monitoring`
▶	comment[instrument]	required	ms-proteomics	Mass spectrometer instrument used
Description Mass spectrometer instrument used Ontology MS:1000031 Properties multiple cardinality Validators ontology — ontologies: ms, pride The instrument should be a valid MS or PRIDE ontology term Examples `LTQ Orbitrap`, `Q Exactive`, `Orbitrap Fusion Lumos`, `timsTOF Pro`
▶	comment[cleavage agent details]	required	ms-proteomics	Enzyme or chemical used for protein digestion
Description Enzyme or chemical used for protein digestion Ontology MS:1001044 Properties allows N/A Validators ontology — ontologies: ms The cleavage agent details should be valid MS ontology terms Examples `NT=Trypsin;AC=MS:1001251`, `NT=Lys-C;AC=MS:1001309`, `NT=Chymotrypsin;AC=MS:1001306`
▶	comment[label]	required	ms-proteomics	Labeling strategy used for quantification
Description Labeling strategy used for quantification Ontology PRIDE:0000514 Properties Validators ontology — ontologies: pride The label should be a valid PRIDE ontology term Examples `label free sample`, `SILAC light`, `SILAC heavy`, `TMT126`, `iTRAQ114`
▶	comment[fraction identifier]	required	ms-proteomics	Fraction number for fractionated samples (integer, use 1 for non-fractionated). In MS proteomics,...
Description Fraction number for fractionated samples (integer, use 1 for non-fractionated). In MS proteomics, this identifies the chromatographic or electrophoretic fraction (e.g., SCX, hpHRP, SEC fractions). Each fraction maps to one data file. Ontology MS:1000858 Properties type: integer
▶	comment[sdrf version]	recommended	base	Version of the SDRF-Proteomics specification used to annotate this file
Description Version of the SDRF-Proteomics specification used to annotate this file Ontology PRIDE:0000839 Properties Validators semver SDRF specification version Examples `v1.1.0`, `v2.0.0-dev`
▶	characteristics[cell type]	recommended	sample-metadata	Cell type of the sample
Description Cell type of the sample Ontology EFO:0000324 Properties allows N/A allows not available multiple cardinality Validators ontology — ontologies: cl, bto, clo The cell type should be a valid Cell Ontology (CL), BRENDA Tissue Ontology (BTO), or Cell Line Ontology (CLO) term Examples `hepatocyte`, `neuron`, `fibroblast`, `T cell`
▶	characteristics[disease]	recommended	sample-metadata	Disease state of the sample
Description Disease state of the sample Ontology MONDO:0000001 Properties allows N/A allows not available Validators ontology — ontologies: mondo, efo, doid, ncit, pato The disease should be a valid MONDO, EFO, DOID, NCIT, or PATO ontology term. Use 'normal' (PATO:0000461) for healthy samples. Examples `normal`, `breast cancer`, `infection`, `metabolic disease`
▶	comment[dissociation method]	recommended	ms-proteomics	Fragmentation method used in MS/MS
Description Fragmentation method used in MS/MS Ontology MS:1000044 Properties allows N/A allows not available Validators ontology — ontologies: ms, pride Dissociation method should be a child term of MS:1000044 Examples `HCD`, `CID`, `ETD`, `EThcD`
▶	comment[precursor mass tolerance]	recommended	ms-proteomics	Precursor mass tolerance for database search
Description Precursor mass tolerance for database search Ontology PRIDE:0000575 Properties allows N/A allows not available Validators number_with_unit Mass tolerance with unit (ppm, Da, or mmu) Examples `10 ppm`, `20 ppm`, `0.5 Da`, `20 mmu`
▶	comment[fragment mass tolerance]	recommended	ms-proteomics	Fragment mass tolerance for database search
Description Fragment mass tolerance for database search Ontology PRIDE:0000576 Properties allows N/A allows not available Validators number_with_unit Mass tolerance with unit (ppm, Da, or mmu) Examples `0.02 Da`, `20 ppm`, `50 mmu`
▶	comment[modification parameters]	recommended	ms-proteomics	Post-translational modifications searched
Description Post-translational modifications searched Ontology MS:1001055 Properties allows N/A allows not available multiple cardinality Validators ontology — ontologies: unimod, mod The modification parameters should be valid Unimod or PSI-MOD terms Examples `NT=Oxidation;MT=Variable;TA=M;AC=Unimod:35`, `NT=Carbamidomethyl;TA=C;MT=fixed;AC=UNIMOD:4`
▶	comment[sdrf template]	optional	base	Template name and version used for annotation. Two formats are supported - key=value format (NT=t...
Description Template name and version used for annotation. Two formats are supported - key=value format (NT=template_name;VV=vX.Y.Z) or simple format (template_name vX.Y.Z). Multiple templates can be specified using multiple columns. Ontology PRIDE:0000832 Properties allows not available multiple cardinality Validators pattern — pattern: `^(NT=[\w-]+;VV=v\d+\.\d+\.\d+(-[\w.]+)?\|[\w-]+ v\d+\.\d+\.\d+(-[\w.]+)?)$` Template can be specified as 'NT=name;VV=vX.Y.Z' or 'name vX.Y.Z' Examples `NT=human;VV=v1.1.0`, `human v1.1.0`, `NT=ms-proteomics;VV=v1.1.0`, `ms-proteomics v1.1.0`
▶	comment[sdrf annotation tool]	optional	base	Software tool or method used to generate or annotate the SDRF file. Two formats are supported - k...
Description Software tool or method used to generate or annotate the SDRF file. Two formats are supported - key=value format (NT=tool_name;VV=vX.Y.Z) or simple format (tool_name vX.Y.Z). Ontology PRIDE:0000840 Properties allows not available Validators pattern — pattern: `^(NT=[\w-]+;VV=v[\d.]+[\w.-]\|[\w-]+ v[\d.]+[\w.-]\|manual curation)$` Annotation tool can be specified as 'NT=name;VV=vX.Y.Z' or 'name vX.Y.Z' or 'manual curation' Examples `NT=lesSDRF;VV=v0.1.0`, `lesSDRF v0.1.0`, `NT=sdrf-pipelines;VV=v1.0.0`, `sdrf-pipelines v1.0.0`, `manual curation`
▶	comment[sdrf validation hash]	optional	base	Hash value for SDRF validation integrity checking
Description Hash value for SDRF validation integrity checking Properties allows N/A allows not available Validators pattern — pattern: `^.+$` Validation hash string
▶	characteristics[tissue supergroup]	optional	sample-metadata	Broader anatomical grouping or system-level bucket for the sample, used alongside the organism pa...
Description Broader anatomical grouping or system-level bucket for the sample, used alongside the organism part for higher-level grouping Properties allows N/A allows not available Validators ontology — ontologies: uberon, bto Tissue supergroup should be a valid broad UBERON or BTO anatomy term when possible Examples `digestive system`, `nervous system`, `cardiovascular system`, `gastrointestinal tract`
▶	characteristics[pooled sample]	optional	sample-metadata	Whether the sample is a pooled sample combining material from multiple biological sources. Use 'n...
Description Whether the sample is a pooled sample combining material from multiple biological sources. Use 'not pooled' for individual samples, 'pooled' when sources are unknown, or 'SN=sample1;SN=sample2' to list source names. Ontology NCIT:C165587 Properties allows N/A allows not available Validators values — values: `not pooled`, `pooled` pattern — pattern: `^(not pooled\|pooled\|SN=.+(;SN=.+)*)$` Use 'not pooled', 'pooled', or list sample IDs with SN= prefix Examples `SN=sample1;SN=sample2`
▶	characteristics[sample type]	optional	sample-metadata	Classification of the sample role in the experiment. Distinguishes experimental samples from cont...
Description Classification of the sample role in the experiment. Distinguishes experimental samples from controls, references, and other roles in multiplexed or plate-based experiments. Ontology PRIDE:0000895 Properties allows N/A allows not available Validators ontology — ontologies: pride Sample type should be a child of PRIDE:0000895 (sample type) Examples `single cell`, `reference`, `bridge`, `carrier`, `pooled`, `empty`, `quality control sample`, `negative control`
▶	characteristics[material type]	optional	sample-metadata	Type of biological material being analyzed
Description Type of biological material being analyzed Ontology PRIDE:0000837 Properties allows N/A allows not available Validators values — values: `tissue`, `cell`, `cell line`, `organism part`, `whole organism`, `synthetic` Material type
▶	characteristics[tissue mass]	optional	sample-metadata	Mass of tissue used for extraction
Description Mass of tissue used for extraction Ontology OBA:2045411 Properties allows N/A allows not available Validators number_with_unit Tissue mass with unit Examples `50 mg`, `1 g`, `500 ug`
▶	characteristics[biosample accession number]	optional	sample-metadata	BioSample accession number for the sample (e.g., SAMN or SAMEA identifiers)
Description BioSample accession number for the sample (e.g., SAMN or SAMEA identifiers) Ontology NCIT:C175889 Properties allows N/A allows not available Validators accession BioSample accession Examples `SAMN12345678`, `SAMEA12345678`, `SAMD1234567`
▶	characteristics[sampling time]	optional	sample-metadata	Time at which the sample was collected (for longitudinal or time-course studies)
Description Time at which the sample was collected (for longitudinal or time-course studies) Ontology EFO:0000689 Properties allows N/A allows not available Validators number_with_unit Sampling time with unit Examples `0 hour`, `24 hour`, `7 day`, `3 month`
▶	characteristics[treatment]	optional	sample-metadata	Treatment or perturbation applied to the sample (drug, stimulus, environmental stress)
Description Treatment or perturbation applied to the sample (drug, stimulus, environmental stress) Ontology EFO:0000727 Properties allows N/A allows not available Validators ontology — ontologies: ncit, efo Treatment should be a valid ontology term. Use 'untreated' for controls. Examples `untreated`, `LPS stimulation`, `doxorubicin treatment`, `drought stress`, `salt stress`
▶	characteristics[synthetic peptide]	optional	sample-metadata	Whether the sample is a synthetic peptide library or biological material
Description Whether the sample is a synthetic peptide library or biological material Ontology PRIDE:0000495 Properties allows N/A Validators values — values: `synthetic`, `not synthetic` Synthetic peptide status
▶	characteristics[spiked compound]	optional	sample-metadata	Spiked-in compound details using key-value format (CT=compound type, QY=quantity, PS=peptide sequ...
Description Spiked-in compound details using key-value format (CT=compound type, QY=quantity, PS=peptide sequence, AC=UniProt accession, CN=compound name, CV=vendor) Ontology PRIDE:0000496 Properties allows N/A allows not available multiple cardinality Validators pattern — pattern: `^CT=.+(;(QY\|PS\|AC\|CN\|CV\|SP)=.+)*$` Key-value format for spiked compound details (CT=type, SP=species, QY=quantity, PS=sequence, AC=accession, CN=name, CV=vendor) Examples `CT=peptide;PS=PEPTIDESEQ;QY=10 fmol`, `CT=protein;AC=A9WZ33;QY=20 nmol`, `CT=protein;SP=Homo sapiens;QY=1 pmol;AC=P37840`, `CT=mixture;CN=iRT mixture;CV=Biognosys;QY=1 pmol`
▶	characteristics[enrichment process]	optional	sample-metadata	Enrichment strategy applied to the sample (e.g., phosphopeptide enrichment, crosslinked peptide e...
Description Enrichment strategy applied to the sample (e.g., phosphopeptide enrichment, crosslinked peptide enrichment, glycopeptide enrichment) Ontology EFO:0009090 Properties allows N/A allows not available Validators ontology — ontologies: pride, efo Enrichment type should be a child term of EFO:0009090 (enrichment process) Examples `enrichment of cross-linked peptides`, `enrichment of phosphorylated protein`, `enrichment of glycopeptides`, `enrichment of ubiquitinated proteins`
▶	comment[fractionation method]	optional	ms-proteomics	Peptide fractionation method used before MS analysis
Description Peptide fractionation method used before MS analysis Ontology PRIDE:0000550 Properties allows N/A allows not available Validators ontology — ontologies: pride Fractionation method should be a child term of PRIDE:0000550 Examples `High-pH reversed-phase chromatography (hpHRP)`, `Strong cation-exchange chromatography (SCX)`, `Strong anion-exchange chromatography (SAX)`, `Size-exclusion chromatography (SEC)`
▶	comment[collision energy]	optional	ms-proteomics	Collision energy used for fragmentation
Description Collision energy used for fragmentation Ontology MS:1000045 Properties allows N/A allows not available Validators pattern — pattern: `^\d+(\.\d+)?%?\s(NCE\|eV)(;\d+(\.\d+)?%?\s(NCE\|eV))*$` Collision energy format: {value} {unit} where unit is NCE or eV. For multiple values, use semicolon-separated entries. Examples `30 NCE`, `30% NCE`, `27 eV`, `25 NCE;27 NCE;30 NCE`
▶	comment[reduction reagent]	optional	ms-proteomics	Chemical reagent used for disulfide bond reduction
Description Chemical reagent used for disulfide bond reduction Ontology PRIDE:0000607 Properties allows N/A allows not available Validators ontology — ontologies: pride, ms Reduction reagent should be a valid PRIDE or MS ontology term Examples `dithiothreitol`, `tris(2-carboxyethyl)phosphine`
▶	comment[alkylation reagent]	optional	ms-proteomics	Chemical reagent used for cysteine alkylation
Description Chemical reagent used for cysteine alkylation Ontology PRIDE:0000598 Properties allows N/A allows not available Validators ontology — ontologies: pride, ms Alkylation reagent should be a valid PRIDE or MS ontology term Examples `iodoacetamide`, `chloroacetamide`
▶	characteristics[depletion]	optional	ms-proteomics	Whether abundant protein depletion was performed
Description Whether abundant protein depletion was performed Ontology PRIDE:0000020 Properties allows N/A allows not available Validators values — values: `no depletion`, `depletion` Depletion status
▶	comment[ms2 mass analyzer]	optional	ms-proteomics	Mass analyzer used for MS2 acquisition
Description Mass analyzer used for MS2 acquisition Ontology MS:1000443 Properties allows N/A allows not available Validators ontology — ontologies: ms Should be a valid MS ontology term Examples `orbitrap`, `ion trap`, `TOF`
▶	comment[sample preparation batch]	optional	ms-proteomics	Batch identifier for sample preparation (plate, chip, processing batch). Useful for batch effect ...
Description Batch identifier for sample preparation (plate, chip, processing batch). Useful for batch effect correction in multi-batch experiments. Properties allows N/A allows not available Validators pattern — pattern: `^.+$` Sample preparation batch identifier Examples `plate1`, `batch_20220601`, `prep_A`
▶	comment[lc batch]	optional	ms-proteomics	Liquid chromatography batch identifier for batch effect tracking (e.g., column changes, LC system swaps)
Description Liquid chromatography batch identifier for batch effect tracking (e.g., column changes, LC system swaps) Properties allows N/A allows not available Validators pattern — pattern: `^.+$` LC batch identifier Examples `LC1`, `column_A`
▶	comment[acquisition date]	optional	ms-proteomics	Date of MS data acquisition (ISO 8601 format recommended). Useful for tracking instrument drift a...
Description Date of MS data acquisition (ISO 8601 format recommended). Useful for tracking instrument drift and batch effects. Properties allows N/A allows not available Validators pattern — pattern: `^.+$` Acquisition date/time Examples `2022-06-01`, `2022-06-01T18:28:37`
▶	comment[ms min mz]	optional	ms-proteomics	MS method-defined minimum precursor (MS1) m/z setting used to acquire the data
Description MS method-defined minimum precursor (MS1) m/z setting used to acquire the data Ontology PRIDE:0000476 Properties allows N/A allows not available Validators mz_value Precursor m/z value with unit Examples `100m/z`, `200m/z`, `350.5m/z`
▶	comment[ms max mz]	optional	ms-proteomics	MS method-defined maximum precursor (MS1) m/z setting used to acquire the data
Description MS method-defined maximum precursor (MS1) m/z setting used to acquire the data Ontology PRIDE:0000477 Properties allows N/A allows not available Validators mz_value Precursor m/z value with unit Examples `1200m/z`, `1600m/z`, `2000m/z`
▶	comment[ms min charge]	optional	ms-proteomics	MS method-defined minimum precursor charge state setting used to acquire the data
Description MS method-defined minimum precursor charge state setting used to acquire the data Ontology PRIDE:0000472 Properties allows N/A allows not available Validators pattern — pattern: `^\d+$` Integer charge state Examples `1`, `2`
▶	comment[ms max charge]	optional	ms-proteomics	MS method-defined maximum precursor charge state setting used to acquire the data
Description MS method-defined maximum precursor charge state setting used to acquire the data Ontology PRIDE:0000473 Properties allows N/A allows not available Validators pattern — pattern: `^\d+$` Integer charge state Examples `6`, `7`, `8`
▶	comment[ms min rt]	optional	ms-proteomics	LC method-defined minimum retention time setting used to acquire the data (in minutes)
Description LC method-defined minimum retention time setting used to acquire the data (in minutes) Ontology PRIDE:0000474 Properties allows N/A allows not available Validators pattern — pattern: `^[\d.]+$` Numeric retention time in minutes Examples `0`, `5`, `10.5`
▶	comment[ms max rt]	optional	ms-proteomics	LC method-defined maximum retention time setting used to acquire the data (in minutes)
Description LC method-defined maximum retention time setting used to acquire the data (in minutes) Ontology PRIDE:0000475 Properties allows N/A allows not available Validators pattern — pattern: `^[\d.]+$` Numeric retention time in minutes Examples `60`, `90`, `120`
▶	comment[ms min im]	optional	ms-proteomics	MS method-defined minimum ion mobility setting used to acquire the data (1/K0 or Vs/cm2)
Description MS method-defined minimum ion mobility setting used to acquire the data (1/K0 or Vs/cm2) Ontology PRIDE:0000841 Properties allows N/A allows not available Validators pattern — pattern: `^[\d.]+$` Numeric ion mobility value Examples `0.6`, `0.7`
▶	comment[ms max im]	optional	ms-proteomics	MS method-defined maximum ion mobility setting used to acquire the data (1/K0 or Vs/cm2)
Description MS method-defined maximum ion mobility setting used to acquire the data (1/K0 or Vs/cm2) Ontology PRIDE:0000842 Properties allows N/A allows not available Validators pattern — pattern: `^[\d.]+$` Numeric ion mobility value Examples `1.3`, `1.4`, `1.6`
▶	comment[ms2 min mz]	optional	ms-proteomics	MS method-defined minimum product ion (MS2) m/z setting used to acquire the data
Description MS method-defined minimum product ion (MS2) m/z setting used to acquire the data Ontology PRIDE:0001011 Properties allows N/A allows not available Validators mz_value Product ion m/z value with unit Examples `100m/z`, `200m/z`
▶	comment[ms2 max mz]	optional	ms-proteomics	MS method-defined maximum product ion (MS2) m/z setting used to acquire the data
Description MS method-defined maximum product ion (MS2) m/z setting used to acquire the data Ontology PRIDE:0001012 Properties allows N/A allows not available Validators mz_value Product ion m/z value with unit Examples `1800m/z`, `2000m/z`
▶	comment[ms3 min mz]	optional	ms-proteomics	MS method-defined minimum product ion (MS3) m/z setting used to acquire the data
Description MS method-defined minimum product ion (MS3) m/z setting used to acquire the data Ontology PRIDE:0001013 Properties allows N/A allows not available Validators mz_value Product ion m/z value with unit Examples `100m/z`, `200m/z`
▶	comment[ms3 max mz]	optional	ms-proteomics	MS method-defined maximum product ion (MS3) m/z setting used to acquire the data
Description MS method-defined maximum product ion (MS3) m/z setting used to acquire the data Ontology PRIDE:0001014 Properties allows N/A allows not available Validators mz_value Product ion m/z value with unit Examples `1500m/z`, `2000m/z`
▶	comment[ms1 scan range]	optional	ms-proteomics	m/z scan range for MS1 spectra as an interval. Alternative to separate ms min mz / ms max mz columns
Description m/z scan range for MS1 spectra as an interval. Alternative to separate ms min mz / ms max mz columns Ontology PRIDE:0001008 Properties allows N/A allows not available Validators mz_range_interval m/z range interval for MS1 spectra Examples `400m/z-1200m/z`, `350m/z-1600m/z`
▶	comment[ms2 scan range]	optional	ms-proteomics	m/z scan range for MS2 spectra as an interval. Alternative to separate ms2 min mz / ms2 max mz columns
Description m/z scan range for MS2 spectra as an interval. Alternative to separate ms2 min mz / ms2 max mz columns Ontology PRIDE:0001009 Properties allows N/A allows not available Validators mz_range_interval m/z range interval for MS2 spectra Examples `100m/z-2000m/z`, `200m/z-1800m/z`
▶	comment[ms3 scan range]	optional	ms-proteomics	m/z scan range for MS3 spectra as an interval. Alternative to separate ms3 min mz / ms3 max mz columns
Description m/z scan range for MS3 spectra as an interval. Alternative to separate ms3 min mz / ms3 max mz columns Ontology PRIDE:0001010 Properties allows N/A allows not available Validators mz_range_interval m/z range interval for MS3 spectra Examples `100m/z-1500m/z`, `200m/z-2000m/z`
▶	comment[elution conditions]	optional	ms-proteomics	Conditions used for peptide/protein elution
Description Conditions used for peptide/protein elution Ontology OBI:0302905 Properties allows N/A allows not available Validators pattern — pattern: `^.+$` Free-text elution conditions Examples `0.1% TFA in water`, `80% acetonitrile`, `gradient 5-35% ACN in 60 min`

Contributors

Yasset Perez-Riverol (yperez@ebi.ac.uk) - EMBL-EBI
Deepti Jaiswal Kundu (jaiswal@ebi.ac.uk) - EMBL-EBI
Nithu Sara John (nithu@ebi.ac.uk) - EMBL-EBI
Nandana Madhusoodanan (nandana@ebi.ac.uk) - EMBL-EBI
Asier Larrea (alarre@ebi.ac.uk) - EMBL-EBI
Toan Phung (TPhung001@dundee.ac.uk) - University of Dundee
Timo Sachsenberg (timo.sachsenberg@uni-tuebingen.de) - University of Tübingen